If it takes thousands of years, monitoring air density can probably give you at least a couple centuries heads-up, like “we expect in 150 years from now that the atmosphere will thin to the point our cities lose buoyancy. That gives us approximately five generations to think of a solution.”
Or move the cloud cities to one of the gas giants (presumably where the water is coming from anyway, or at least one of their moons, so the interplanetary transport infrastructure would already exist at this point.
If it takes thousands of years, monitoring air density can probably give you at least a couple centuries heads-up, like “we expect in 150 years from now that the atmosphere will thin to the point our cities lose buoyancy. That gives us approximately five generations to think of a solution.”
The solution would be to evacuate, because the surface still would be hostile to human life. Or don’t waste the resources, and have some patience.
Or move the cloud cities to one of the gas giants (presumably where the water is coming from anyway, or at least one of their moons, so the interplanetary transport infrastructure would already exist at this point.